Xmolout Workflow
Direct command workflow for xmolout file utilities.
This module implements CLI workflow orchestration for its command family, including argument parsing, request construction, execution dispatch, and result presentation handoff.
Usage context
- Command routing: Resolve CLI aliases and normalized command names.
- Task execution: Build request objects and invoke registered tasks.
- Output handling: Forward results to table, plot, export, or report flows.
Command: trim-xmolout
Arguments
No command-specific arguments found.
Common Runtime and Presentation Arguments
These are shared workflow-level CLI flags added before command-specific options, covering runtime context (engine/input/storage) and output presentation/export behavior.
| Flag | Required | Default | Help | Choices |
|---|---|---|---|---|
--file |
No | xmolout | Input xmolout file. Example: --file runs/job1/xmolout, which reads that trajectory/output file as input. | |
--output |
No | xmolout_trimmed | Output trimmed xmolout file. Example: --output xmolout_light, which writes the reduced-content file with that name. | |
--copy-to-dot |
No | Also copy generated output to current directory. Example: --copy-to-dot, which keeps a convenience copy where you run the command. | ||
--run-id |
No | Run identifier for run-scoped layout (e.g., run_91ac0e). | ||
--project-root |
No | Project root that contains inputs/, data/, analysis/, etc. | ||
--analysis-id |
No | Optional analysis artifact id; defaults to run id. |