Fort7 Workflow
Compatibility layer for the former nested fort7 command workflow.
Command: fort7
Arguments
Outputs and plots
| Flag |
Required |
Default |
Help |
Choices |
--detail-format |
No |
|
Optional detail format (default: Parquet; legacy: CSV). |
parquet, csv |
Execution
| Flag |
Required |
Default |
Help |
Choices |
--execution |
No |
auto |
Execution backend; unsupported backends fall back to serial with a logged reason. |
auto, serial, threads, processes |
--workers |
No |
0 |
Frame workers: auto or N (default: auto). |
|
--chunk-size |
No |
0 |
Maximum in-flight frames: auto or N. |
|
Storage and cache
| Flag |
Required |
Default |
Help |
Choices |
--output-profile |
No |
standard |
Artifact profile (default: standard). |
standard, minimal, full, legacy |
Diagnostics and compatibility
| Flag |
Required |
Default |
Help |
Choices |
-h, --help |
No |
|
show this help message and exit |
|
--help-all, --all-flags |
No |
|
Show every option, grouped by purpose. |
|
Command: fort7 get
Arguments
Scientific choices
| Flag |
Required |
Default |
Help |
Choices |
--yaxis |
Yes |
|
|
|
--atom |
No |
|
|
|
--frames |
No |
|
|
|
--regex |
No |
False |
|
|
| Flag |
Required |
Default |
Help |
Choices |
--file |
No |
fort.7 |
|
|
--control |
No |
control |
|
|
Outputs and plots
| Flag |
Required |
Default |
Help |
Choices |
--xaxis |
No |
iter |
|
iter, frame, time |
--export |
No |
|
|
|
--save |
No |
|
|
|
--plot |
No |
False |
|
|
--detail-format |
No |
|
Optional detail format (default: Parquet; legacy: CSV). |
parquet, csv |
Execution
| Flag |
Required |
Default |
Help |
Choices |
--execution |
No |
|
Execution backend; unsupported backends fall back to serial with a logged reason. |
auto, serial, threads, processes |
--workers |
No |
|
Frame workers: auto or N (default: auto). |
|
--chunk-size |
No |
|
Maximum in-flight frames: auto or N. |
|
Storage and cache
| Flag |
Required |
Default |
Help |
Choices |
--output-profile |
No |
|
Artifact profile (default: standard). |
standard, minimal, full, legacy |
Diagnostics and compatibility
| Flag |
Required |
Default |
Help |
Choices |
-h, --help |
No |
|
show this help message and exit |
|
--help-all, --all-flags |
No |
|
Show every option, grouped by purpose. |
|
Command: fort7 edges
Arguments
Scientific choices
| Flag |
Required |
Default |
Help |
Choices |
--frames |
No |
|
|
|
--min-bo |
No |
0.0 |
|
|
--directed |
No |
False |
|
|
--aggregate |
No |
max |
|
max, mean |
--include-self |
No |
False |
|
|
| Flag |
Required |
Default |
Help |
Choices |
--file |
No |
fort.7 |
|
|
--control |
No |
control |
|
|
Outputs and plots
| Flag |
Required |
Default |
Help |
Choices |
--xaxis |
No |
frame |
|
iter, frame, time |
--export |
No |
|
|
|
--save |
No |
|
|
|
--plot |
No |
False |
|
|
--detail-format |
No |
|
Optional detail format (default: Parquet; legacy: CSV). |
parquet, csv |
Execution
| Flag |
Required |
Default |
Help |
Choices |
--execution |
No |
|
Execution backend; unsupported backends fall back to serial with a logged reason. |
auto, serial, threads, processes |
--workers |
No |
|
Frame workers: auto or N (default: auto). |
|
--chunk-size |
No |
|
Maximum in-flight frames: auto or N. |
|
Storage and cache
| Flag |
Required |
Default |
Help |
Choices |
--output-profile |
No |
|
Artifact profile (default: standard). |
standard, minimal, full, legacy |
Diagnostics and compatibility
| Flag |
Required |
Default |
Help |
Choices |
-h, --help |
No |
|
show this help message and exit |
|
--help-all, --all-flags |
No |
|
Show every option, grouped by purpose. |
|
Command: fort7 constats
Arguments
Scientific choices
| Flag |
Required |
Default |
Help |
Choices |
--frames |
No |
|
|
|
--min-bo |
No |
0.0 |
|
|
--directed |
No |
False |
|
|
--how |
No |
mean |
|
mean, max, count |
| Flag |
Required |
Default |
Help |
Choices |
--file |
No |
fort.7 |
|
|
Outputs and plots
| Flag |
Required |
Default |
Help |
Choices |
--export |
No |
|
|
|
--save |
No |
|
|
|
--detail-format |
No |
|
Optional detail format (default: Parquet; legacy: CSV). |
parquet, csv |
Execution
| Flag |
Required |
Default |
Help |
Choices |
--execution |
No |
|
Execution backend; unsupported backends fall back to serial with a logged reason. |
auto, serial, threads, processes |
--workers |
No |
|
Frame workers: auto or N (default: auto). |
|
--chunk-size |
No |
|
Maximum in-flight frames: auto or N. |
|
Storage and cache
| Flag |
Required |
Default |
Help |
Choices |
--output-profile |
No |
|
Artifact profile (default: standard). |
standard, minimal, full, legacy |
Diagnostics and compatibility
| Flag |
Required |
Default |
Help |
Choices |
-h, --help |
No |
|
show this help message and exit |
|
--help-all, --all-flags |
No |
|
Show every option, grouped by purpose. |
|
Command: fort7 bond-ts
Arguments
Scientific choices
| Flag |
Required |
Default |
Help |
Choices |
--frames |
No |
|
|
|
--directed |
No |
False |
|
|
--bo-threshold |
No |
0.0 |
|
|
--src |
No |
|
|
|
--dst |
No |
|
|
|
| Flag |
Required |
Default |
Help |
Choices |
--file |
No |
fort.7 |
|
|
--control |
No |
control |
|
|
Outputs and plots
| Flag |
Required |
Default |
Help |
Choices |
--wide |
No |
False |
|
|
--xaxis |
No |
iter |
|
iter, frame, time |
--export |
No |
|
|
|
--save |
No |
|
|
|
--plot |
No |
False |
|
|
--detail-format |
No |
|
Optional detail format (default: Parquet; legacy: CSV). |
parquet, csv |
Execution
| Flag |
Required |
Default |
Help |
Choices |
--execution |
No |
|
Execution backend; unsupported backends fall back to serial with a logged reason. |
auto, serial, threads, processes |
--workers |
No |
|
Frame workers: auto or N (default: auto). |
|
--chunk-size |
No |
|
Maximum in-flight frames: auto or N. |
|
Storage and cache
| Flag |
Required |
Default |
Help |
Choices |
--output-profile |
No |
|
Artifact profile (default: standard). |
standard, minimal, full, legacy |
Diagnostics and compatibility
| Flag |
Required |
Default |
Help |
Choices |
-h, --help |
No |
|
show this help message and exit |
|
--help-all, --all-flags |
No |
|
Show every option, grouped by purpose. |
|
Command: fort7 bond-events
Arguments
Scientific choices
| Flag |
Required |
Default |
Help |
Choices |
--frames |
No |
|
|
|
--src |
No |
|
|
|
--dst |
No |
|
|
|
--threshold |
No |
0.35 |
|
|
--hysteresis |
No |
0.05 |
|
|
--smooth |
No |
ma |
|
ma, ema, none |
--window |
No |
7 |
|
|
--ema-alpha |
No |
|
|
|
--min-run |
No |
3 |
|
|
--directed |
No |
False |
|
|
| Flag |
Required |
Default |
Help |
Choices |
--file |
No |
fort.7 |
|
|
Outputs and plots
| Flag |
Required |
Default |
Help |
Choices |
--xaxis |
No |
iter |
|
iter, frame |
--export |
No |
|
|
|
--save |
No |
|
|
|
--detail-format |
No |
|
Optional detail format (default: Parquet; legacy: CSV). |
parquet, csv |
Execution
| Flag |
Required |
Default |
Help |
Choices |
--execution |
No |
|
Execution backend; unsupported backends fall back to serial with a logged reason. |
auto, serial, threads, processes |
--workers |
No |
|
Frame workers: auto or N (default: auto). |
|
--chunk-size |
No |
|
Maximum in-flight frames: auto or N. |
|
Storage and cache
| Flag |
Required |
Default |
Help |
Choices |
--output-profile |
No |
|
Artifact profile (default: standard). |
standard, minimal, full, legacy |
Diagnostics and compatibility
| Flag |
Required |
Default |
Help |
Choices |
-h, --help |
No |
|
show this help message and exit |
|
--help-all, --all-flags |
No |
|
Show every option, grouped by purpose. |
|
Common Runtime and Presentation Arguments
These are shared workflow-level CLI flags added before command-specific options, covering runtime context (engine/input/storage) and output presentation/export behavior.
Each command table above includes its shared and inherited options.